Variant report

Variant	rs16933837
Chromosome Location	chr11:17134732-17134733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17132980..17134909-chr11:17297044..17299021,2	K562	blood:

Variant related genes	Relation type
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11820060	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11826763	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16924900	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16933829	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:17108200-17141400	Strong transcription	Liver	Liver
8	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:17115800-17154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:17116800-17134800	Weak transcription	NHLF	lung
19	chr11:17116800-17149800	Weak transcription	A549	lung
20	chr11:17117800-17147000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:17117800-17151800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:17118200-17135600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:17118200-17139400	Strong transcription	Placenta	Placenta
24	chr11:17118200-17141400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:17118400-17139200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr11:17118400-17146800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:17119400-17134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
29	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:17120600-17155800	Weak transcription	Esophagus	oesophagus
31	chr11:17120800-17156200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
33	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
36	chr11:17122200-17141600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:17122600-17145000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:17123000-17140000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:17124000-17144200	Strong transcription	Adipose Nuclei	Adipose
40	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
41	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:17126000-17135200	Strong transcription	Fetal Intestine Small	intestine
43	chr11:17126000-17150000	Weak transcription	K562	blood
44	chr11:17126600-17136000	Weak transcription	Hela-S3	cervix
45	chr11:17126800-17143600	Weak transcription	NHDF-Ad	bronchial
46	chr11:17126800-17149400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:17126800-17149800	Weak transcription	Brain Angular Gyrus	brain
48	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
49	chr11:17127000-17134800	Strong transcription	HUVEC	blood vessel
50	chr11:17127200-17149000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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