Variant report

Variant	rs16934329
Chromosome Location	chr11:17535273-17535274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11024312	0.86[EUR][1000 genomes]
rs11024318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs12271449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287484	0.86[EUR][1000 genomes]
rs41282938	0.94[EUR][1000 genomes]
rs7109635	1.00[CEU][hapmap]
rs7129173	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv33415	chr11:17532596-17549436	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
2	chr11:17526200-17539400	Weak transcription	Pancreas	Pancrea
3	chr11:17526600-17536600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17526600-17537200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:17527600-17549200	Strong transcription	Duodenum Mucosa	Duodenum
6	chr11:17528800-17544000	Weak transcription	Gastric	stomach
7	chr11:17529800-17548600	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr11:17530600-17536600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:17530800-17539800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:17531200-17536000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr11:17531600-17547200	Strong transcription	Fetal Intestine Large	intestine
12	chr11:17531800-17552400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:17532200-17547200	Strong transcription	Fetal Intestine Small	intestine
14	chr11:17533400-17539400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:17533600-17537400	Weak transcription	Spleen	Spleen
16	chr11:17533600-17537600	Weak transcription	Colonic Mucosa	Colon
17	chr11:17533600-17541800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:17533800-17539400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:17534400-17536200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:17534800-17535600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:17535000-17535400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:17535000-17538400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:17535200-17535600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:17535200-17537400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links