Variant report

Variant	rs16934798
Chromosome Location	chr9:16541634-16541635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56663065	1.00[EUR][1000 genomes]
rs73645995	1.00[EUR][1000 genomes]
rs73645996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16525000-16551400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:16528000-16553200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:16528800-16551200	Weak transcription	Fetal Intestine Large	intestine
4	chr9:16531400-16551200	Weak transcription	Fetal Stomach	stomach
5	chr9:16534000-16542600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:16536000-16552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16536200-16551600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:16540400-16542000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:16540400-16542600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:16540400-16542800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:16540600-16542400	Enhancers	NH-A	brain
12	chr9:16540600-16542800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:16540600-16543600	Enhancers	Primary T cells from cord blood	blood
14	chr9:16540800-16541800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:16540800-16542000	Enhancers	HSMMtube	muscle
16	chr9:16540800-16542000	Enhancers	NHDF-Ad	bronchial
17	chr9:16540800-16542200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:16540800-16542400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:16540800-16542600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:16540800-16542600	Enhancers	A549	lung
21	chr9:16540800-16542600	Enhancers	NHLF	lung
22	chr9:16540800-16542800	Enhancers	HSMM	muscle
23	chr9:16540800-16543400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:16540800-16543800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:16540800-16544400	Enhancers	Osteobl	bone
26	chr9:16541000-16542600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:16541000-16542800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:16541200-16542000	Enhancers	Adipose Nuclei	Adipose
29	chr9:16541200-16542200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:16541200-16542600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr9:16541200-16543400	Enhancers	Colon Smooth Muscle	Colon
32	chr9:16541200-16545200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:16541200-16546200	Enhancers	Ovary	ovary
34	chr9:16541200-16552000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:16541400-16542800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr9:16541400-16544200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:16541400-16551200	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:16541600-16542600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:16541600-16543000	Weak transcription	Fetal Thymus	thymus
40	chr9:16541600-16543400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:16541600-16544000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:16541600-16544400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:16541600-16545400	Weak transcription	Psoas Muscle	Psoas
44	chr9:16541600-16547200	Weak transcription	Fetal Lung	lung

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