Variant report

Variant	rs16935010
Chromosome Location	chr12:11732725-11732726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10491979	1.00[EUR][1000 genomes]
rs10491981	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304175	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12307843	1.00[EUR][1000 genomes]
rs16935013	0.93[EUR][1000 genomes]
rs16935135	0.90[EUR][1000 genomes]
rs17745379	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745415	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795551	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs57529731	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61472986	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302311	1.00[EUR][1000 genomes]
rs73286605	1.00[EUR][1000 genomes]
rs73286618	0.90[EUR][1000 genomes]
rs7954816	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs7972594	1.00[EUR][1000 genomes]
rs7975032	0.97[EUR][1000 genomes]
rs969769	1.00[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11728800-11734000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr12:11729200-11733200	Weak transcription	Thymus	Thymus
3	chr12:11729600-11733000	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:11729600-11733200	Weak transcription	HUVEC	blood vessel
5	chr12:11729800-11733400	Weak transcription	Esophagus	oesophagus
6	chr12:11730400-11733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:11730800-11762200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:11731000-11733000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:11731000-11733000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:11731000-11733200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:11731000-11733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:11731200-11733000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:11731200-11733000	Weak transcription	NHDF-Ad	bronchial
14	chr12:11731200-11733000	Weak transcription	NHLF	lung
15	chr12:11731200-11734600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr12:11731600-11733800	Flanking Active TSS	GM12878-XiMat	blood
17	chr12:11732200-11734200	Weak transcription	Primary B cells from cord blood	blood
18	chr12:11732200-11734600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:11732200-11734600	Enhancers	HMEC	breast
20	chr12:11732400-11733000	Enhancers	Osteobl	bone
21	chr12:11732400-11733800	Enhancers	Aorta	Aorta
22	chr12:11732400-11734000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr12:11732400-11734000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:11732400-11734000	Enhancers	Hela-S3	cervix
25	chr12:11732400-11734600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:11732400-11734600	Enhancers	NHEK	skin
27	chr12:11732600-11733400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr12:11732600-11733600	Weak transcription	Gastric	stomach
29	chr12:11732600-11733600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr12:11732600-11733800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr12:11732600-11734000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:11732600-11734600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr12:11732600-11734600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:11732600-11734600	Enhancers	Adipose Nuclei	Adipose
35	chr12:11732600-11734600	Enhancers	Fetal Lung	lung
36	chr12:11732600-11734600	Enhancers	NH-A	brain

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