Variant report

Variant	rs16935059
Chromosome Location	chr12:11737170-11737171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10491980	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11054355	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12296206	1.00[ASN][1000 genomes]
rs12297330	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12306671	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12312814	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12318942	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1641623	1.00[ASN][1000 genomes]
rs16934780	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934824	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16935084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56717408	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7316082	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73286612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7972959	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7975230	1.00[ASN][1000 genomes]
rs7975331	1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11730800-11762200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:11733000-11737600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:11734600-11737200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:11734600-11742800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:11734800-11737200	Weak transcription	HUVEC	blood vessel
6	chr12:11736800-11737600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:11736800-11738000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:11736800-11738000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr12:11737000-11737400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:11737000-11737600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:11737000-11737800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:11737000-11737800	Enhancers	Adipose Nuclei	Adipose
13	chr12:11737000-11737800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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