Variant report

Variant	rs16938534
Chromosome Location	chr11:46887384-46887385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:46886818-46887429	SK-N-SH	brain:	n/a	chr11:46887061-46887069 chr11:46887059-46887071 chr11:46887057-46887068 chr11:46887092-46887101

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46882846..46885470-chr11:46886195..46888805,2	K562	blood:

Variant related genes	Relation type
LRP4	TF binding region
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10466476	0.87[CEU][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.88[CEU][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.88[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.88[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	1.00[YRI][hapmap]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136485	0.96[YRI][hapmap]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.82[CEU][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.88[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7108147	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	1.00[CEU][hapmap]
rs7115986	0.88[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122604	0.82[YRI][hapmap]
rs7123729	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46894400	Weak transcription	HMEC	breast
3	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
4	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
5	chr11:46868800-46913000	Weak transcription	A549	lung
6	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:46876200-46894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:46876600-46889400	Weak transcription	Colonic Mucosa	Colon
10	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:46877200-46887400	Strong transcription	Brain Anterior Caudate	brain
13	chr11:46877400-46888800	Weak transcription	Psoas Muscle	Psoas
14	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:46877800-46891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
21	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:46878000-46889800	Weak transcription	Aorta	Aorta
23	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
25	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:46878800-46887400	Strong transcription	HepG2	liver
27	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:46879200-46901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:46879400-46887400	Strong transcription	Brain Substantia Nigra	brain
30	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:46880000-46901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:46880800-46892600	Weak transcription	Lung	lung
33	chr11:46880800-46896800	Weak transcription	Adipose Nuclei	Adipose
34	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr11:46881000-46888800	Weak transcription	Right Ventricle	heart
36	chr11:46881000-46889400	Weak transcription	Pancreas	Pancrea
37	chr11:46881000-46890200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:46882000-46897600	Weak transcription	Stomach Mucosa	stomach
39	chr11:46882400-46887400	Strong transcription	Fetal Intestine Large	intestine
40	chr11:46882400-46894400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:46882400-46894600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:46882600-46892600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:46883600-46887400	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr11:46883600-46891400	Strong transcription	Fetal Lung	lung
45	chr11:46883800-46887800	Strong transcription	Placenta	Placenta
46	chr11:46883800-46899200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:46883800-46904200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr11:46884200-46891600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr11:46884800-46894600	Weak transcription	Gastric	stomach
50	chr11:46885000-46889400	Weak transcription	Left Ventricle	heart

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