Variant report

Variant	rs16939409
Chromosome Location	chr8:49994899-49994900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11988057	1.00[AMR][1000 genomes]
rs11989446	1.00[AMR][1000 genomes]
rs11989489	1.00[AMR][1000 genomes]
rs11990190	1.00[AMR][1000 genomes]
rs11990660	1.00[AMR][1000 genomes]
rs11996810	1.00[AMR][1000 genomes]
rs16939327	1.00[AMR][1000 genomes]
rs16939335	1.00[AMR][1000 genomes]
rs16939391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939472	1.00[AMR][1000 genomes]
rs6980664	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6986206	1.00[AMR][1000 genomes]
rs6989872	1.00[AMR][1000 genomes]
rs6991176	1.00[AMR][1000 genomes]
rs6993035	0.81[AFR][1000 genomes]
rs6997593	1.00[AMR][1000 genomes]
rs7005086	1.00[AMR][1000 genomes]
rs7017854	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3383502	chr8:49991448-50020707	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49987200-49998800	Weak transcription	Psoas Muscle	Psoas
2	chr8:49994600-49995000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:49994800-49995000	Enhancers	Fetal Brain Male	brain
4	chr8:49994800-49995000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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