The 2.0 version of rSNPBase

Variant report

Variant rs16940806
Chromosome Location chr17:44103826-44103827
allele A/C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:44081800-44104800 Weak transcription Right Atrium heart
2 chr17:44085600-44104600 Weak transcription Fetal Brain Male brain
3 chr17:44092000-44105800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr17:44092000-44106000 Weak transcription NHDF-Ad bronchial
5 chr17:44092000-44108000 Weak transcription HMEC breast
6 chr17:44092200-44104200 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr17:44095000-44104200 Weak transcription Muscle Satellite Cultured Cells --
8 chr17:44095800-44104800 Strong transcription Fetal Brain Female brain
9 chr17:44095800-44105200 Strong transcription Brain Germinal Matrix brain
10 chr17:44095800-44106600 Weak transcription HUVEC blood vessel
11 chr17:44096000-44105000 Weak transcription Psoas Muscle Psoas
12 chr17:44096000-44108200 Weak transcription Small Intestine intestine
13 chr17:44096200-44104600 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr17:44096800-44104800 Weak transcription Left Ventricle heart
15 chr17:44097400-44111200 Strong transcription Fetal Intestine Small intestine
16 chr17:44097800-44107800 Weak transcription NHEK skin
17 chr17:44097800-44117400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr17:44098000-44104600 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr17:44098000-44105200 Weak transcription HSMM muscle
20 chr17:44098000-44107800 Weak transcription K562 blood
21 chr17:44098200-44121400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr17:44098400-44104800 Weak transcription HSMMtube muscle
23 chr17:44098400-44106000 Weak transcription Rectal Smooth Muscle rectum
24 chr17:44098400-44106800 Strong transcription Stomach Smooth Muscle stomach
25 chr17:44098600-44104000 Weak transcription H1 Cell Line embryonic stem cell
26 chr17:44098600-44106800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr17:44098600-44110000 Weak transcription Stomach Mucosa stomach
28 chr17:44098800-44104200 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr17:44098800-44107800 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr17:44098800-44107800 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr17:44099000-44104200 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr17:44099000-44105200 Weak transcription Primary hematopoietic stem cells blood
33 chr17:44099000-44105800 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr17:44099000-44107800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr17:44099000-44109600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr17:44099200-44105000 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr17:44099200-44106600 Weak transcription Hela-S3 cervix
38 chr17:44099200-44107600 Weak transcription Fetal Kidney kidney
39 chr17:44099200-44121400 Strong transcription A549 lung
40 chr17:44099400-44104800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr17:44099400-44107800 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr17:44099600-44112400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr17:44099800-44104400 Strong transcription Brain Angular Gyrus brain
44 chr17:44099800-44117800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr17:44100000-44112800 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr17:44100000-44117400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr17:44100000-44120000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr17:44100000-44121000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr17:44100000-44132200 Strong transcription Thymus Thymus
50 chr17:44100400-44105200 Strong transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015