Variant report

Variant	rs16942660
Chromosome Location	chr15:60801066-60801067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:60800935-60801455	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60799601..60801963-chr15:60810773..60812525,2	MCF-7	breast:
2	chr15:60799481..60802062-chr15:60805625..60807982,2	K562	blood:

Variant related genes	Relation type
ENSG00000245534	TF binding region
ENSG00000245534	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4775277	1.00[AMR][1000 genomes]
rs6494203	1.00[AMR][1000 genomes]
rs74017206	1.00[AMR][1000 genomes]
rs74017207	1.00[AMR][1000 genomes]
rs74020720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028860	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525689	chr15:60740841-60823417	Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60772200-60803400	Weak transcription	Fetal Kidney	kidney
2	chr15:60772200-60803800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:60772400-60812400	Weak transcription	Fetal Intestine Large	intestine
4	chr15:60772600-60803600	Weak transcription	Thymus	Thymus
5	chr15:60772800-60846800	Weak transcription	Primary B cells from cord blood	blood
6	chr15:60777200-60811800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:60779800-60814800	Weak transcription	Ovary	ovary
8	chr15:60783600-60810600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:60786000-60803600	Weak transcription	Right Ventricle	heart
10	chr15:60787000-60802000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:60787200-60803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:60787200-60809600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:60787400-60803400	Weak transcription	Gastric	stomach
14	chr15:60787600-60803200	Weak transcription	Aorta	Aorta
15	chr15:60787600-60812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:60788200-60810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:60788400-60810800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:60788800-60811800	Weak transcription	Colonic Mucosa	Colon
19	chr15:60789000-60812200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:60789600-60811400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:60789800-60803200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:60789800-60803200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:60789800-60803600	Weak transcription	Fetal Intestine Small	intestine
24	chr15:60789800-60812000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:60790200-60810600	Weak transcription	Psoas Muscle	Psoas
26	chr15:60790600-60803200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:60790600-60803200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:60790600-60804000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:60791400-60803200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:60792200-60803200	Weak transcription	Esophagus	oesophagus
31	chr15:60793000-60803200	Weak transcription	Left Ventricle	heart
32	chr15:60793000-60803400	Weak transcription	Right Atrium	heart
33	chr15:60793600-60811400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:60793800-60803200	Weak transcription	HUVEC	blood vessel
35	chr15:60794800-60830400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:60795400-60803200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:60795800-60811800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:60796000-60806800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:60796200-60812600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:60796800-60803000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:60796800-60803200	Weak transcription	Lung	lung
42	chr15:60796800-60803400	Weak transcription	Fetal Stomach	stomach
43	chr15:60796800-60803400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:60796800-60818400	Weak transcription	Spleen	Spleen
45	chr15:60797000-60803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:60797000-60803200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:60797200-60803400	Weak transcription	Pancreas	Pancrea
48	chr15:60797800-60803200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:60798000-60802600	Weak transcription	HepG2	liver
50	chr15:60798000-60803200	Weak transcription	Fetal Muscle Leg	muscle

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