Variant report

Variant	rs16944
Chromosome Location	chr2:113594867-113594868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10169916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1143627	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1143629	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12621220	0.84[CEU][hapmap]
rs13013349	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13032029	0.91[CHB][hapmap];0.87[CHD][hapmap]
rs2466446	0.80[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2466452	0.86[CHB][hapmap]
rs2708914	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2708916	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4447608	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs4848306	0.91[CHB][hapmap]
rs6735739	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16944	IL1B	Cis_1M	lymphoblastoid	RTeQTL
rs16944	IL1B	cis	lymphoblastoid	seeQTL
rs16944	IL1B	cis	multi-tissue	Pritchard

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113590400-113595200	Enhancers	Fetal Intestine Small	intestine
2	chr2:113590600-113596000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:113591200-113595000	Enhancers	Fetal Intestine Large	intestine
4	chr2:113591200-113600200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:113591600-113595000	Enhancers	Adipose Nuclei	Adipose
6	chr2:113591800-113595000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:113592200-113595000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr2:113592800-113597200	Weak transcription	Liver	Liver
9	chr2:113593400-113595000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:113593400-113595000	Enhancers	Primary B cells from peripheral blood	blood
11	chr2:113593400-113595000	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr2:113593800-113595000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:113593800-113595400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:113594000-113595000	Enhancers	NH-A	brain
15	chr2:113594000-113595000	Enhancers	NHDF-Ad	bronchial
16	chr2:113594000-113595400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr2:113594000-113598000	Weak transcription	Stomach Mucosa	stomach
18	chr2:113594200-113595000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:113594200-113595000	Enhancers	Small Intestine	intestine
20	chr2:113594200-113595000	Enhancers	HUVEC	blood vessel
21	chr2:113594400-113595000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:113594400-113595200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr2:113594400-113595200	Enhancers	GM12878-XiMat	blood
24	chr2:113594400-113595200	Enhancers	Osteobl	bone
25	chr2:113594400-113596000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:113594400-113596600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr2:113594400-113597200	Enhancers	Primary B cells from cord blood	blood
28	chr2:113594400-113598200	Enhancers	HMEC	breast
29	chr2:113594400-113600200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr2:113594400-113601200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr2:113594600-113595000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:113594600-113595000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:113594600-113595000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
34	chr2:113594600-113595000	Flanking Active TSS	NHEK	skin
35	chr2:113594600-113595200	Enhancers	Spleen	Spleen
36	chr2:113594600-113595200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr2:113594600-113595400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:113594600-113596400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:113594600-113597400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:113594800-113595000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:113594800-113595000	Enhancers	Esophagus	oesophagus
42	chr2:113594800-113595000	Flanking Active TSS	Hela-S3	cervix
43	chr2:113594800-113595800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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