Variant report

Variant	rs16944275
Chromosome Location	chr16:80241951-80241952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80236581..80241287-chr16:80241834..80245112,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10048095	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514490	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12102352	0.82[AMR][1000 genomes]
rs12103219	0.87[AMR][1000 genomes]
rs12103295	0.93[ASN][1000 genomes]
rs12918598	0.86[ASN][1000 genomes]
rs12922305	0.96[ASN][1000 genomes]
rs12926475	0.83[ASN][1000 genomes]
rs13335223	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13335540	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13338017	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13339499	0.86[ASN][1000 genomes]
rs1478510	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952569	0.82[AMR][1000 genomes]
rs16952595	0.87[AMR][1000 genomes]
rs16952668	0.98[ASN][1000 genomes]
rs16952682	0.89[ASN][1000 genomes]
rs1862698	0.82[AMR][1000 genomes]
rs1904189	0.88[ASN][1000 genomes]
rs1904190	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2069011	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28396536	0.87[AMR][1000 genomes]
rs34282621	0.98[ASN][1000 genomes]
rs34421000	0.94[ASN][1000 genomes]
rs35502443	0.85[ASN][1000 genomes]
rs55916224	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57251439	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7191109	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73577642	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74028046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74028051	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9934786	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059997	chr16:80209367-80247050	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1063466	chr16:80227628-80360463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv906996	chr16:80230224-80334010	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80238000-80242000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:80238000-80242000	Weak transcription	NHEK	skin
3	chr16:80238200-80242000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80238200-80242000	Weak transcription	HMEC	breast
5	chr16:80241600-80242600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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