Variant report
| Variant | rs16952319 |
|---|---|
| Chromosome Location | chr16:80130626-80130627 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:79642319..79644269-chr16:80128981..80131841,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10514481 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs16952297 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs16952339 | 0.87[AFR][1000 genomes] |
| rs16952360 | 0.82[AFR][1000 genomes] |
| rs16952361 | 0.83[AFR][1000 genomes] |
| rs16952363 | 0.81[AFR][1000 genomes] |
| rs16952390 | 0.82[AFR][1000 genomes] |
| rs16952423 | 0.83[AFR][1000 genomes] |
| rs16952442 | 0.82[AFR][1000 genomes] |
| rs5009136 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60927300 | 0.95[AFR][1000 genomes] |
| rs73583872 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs73583885 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs73583898 | 0.81[AFR][1000 genomes] |
| rs73585976 | 0.96[AFR][1000 genomes] |
| rs73585982 | 0.95[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573294 | chr16:80005642-80131944 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv833298 | chr16:80122337-80314603 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80127000-80137200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
