Variant report

Variant	rs16952339
Chromosome Location	chr16:80135945-80135946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10514481	0.82[AFR][1000 genomes]
rs12051173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12325508	0.88[JPT][hapmap]
rs16944264	0.92[ASN][1000 genomes]
rs16952080	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16952121	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16952268	0.84[ASN][1000 genomes]
rs16952283	0.92[ASN][1000 genomes]
rs16952289	0.92[ASN][1000 genomes]
rs16952297	0.85[AFR][1000 genomes]
rs16952305	1.00[ASN][1000 genomes]
rs16952319	0.87[AFR][1000 genomes]
rs16952348	0.96[ASN][1000 genomes]
rs16952360	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952361	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952363	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952365	0.96[ASN][1000 genomes]
rs16952367	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952390	0.92[AFR][1000 genomes]
rs16952392	1.00[ASN][1000 genomes]
rs16952422	1.00[ASN][1000 genomes]
rs16952423	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952439	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952442	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952472	1.00[EUR][1000 genomes]
rs16952526	0.88[ASN][1000 genomes]
rs2126998	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28455836	0.96[ASN][1000 genomes]
rs4479242	0.83[ASN][1000 genomes]
rs4888068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4888069	0.84[ASN][1000 genomes]
rs4888071	0.96[ASN][1000 genomes]
rs4888076	0.92[ASN][1000 genomes]
rs4888077	0.92[ASN][1000 genomes]
rs4888078	0.83[AMR][1000 genomes]
rs4889085	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4889094	0.96[ASN][1000 genomes]
rs4889097	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889101	0.96[ASN][1000 genomes]
rs4889103	1.00[ASN][1000 genomes]
rs4889104	1.00[ASN][1000 genomes]
rs5009136	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56005515	1.00[ASN][1000 genomes]
rs57189314	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57824584	1.00[EUR][1000 genomes]
rs57899846	1.00[EUR][1000 genomes]
rs57929477	1.00[EUR][1000 genomes]
rs60927300	0.82[AFR][1000 genomes]
rs7201181	0.96[ASN][1000 genomes]
rs73583872	0.85[AFR][1000 genomes]
rs73583885	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73583898	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73585959	1.00[EUR][1000 genomes]
rs73585976	0.84[AFR][1000 genomes]
rs73585982	0.82[AFR][1000 genomes]
rs73587910	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80127000-80137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80134400-80136200	Enhancers	HMEC	breast
3	chr16:80134400-80137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80134400-80137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:80134800-80138600	Weak transcription	Osteobl	bone
6	chr16:80135000-80138600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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