Variant report

Variant	rs16952355
Chromosome Location	chr16:80138881-80138882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80133246..80135427-chr16:80136846..80139540,2	MCF-7	breast:
2	chr16:80127406..80129565-chr16:80138549..80141311,2	MCF-7	breast:
3	chr16:80138093..80140462-chr16:80142206..80144298,2	MCF-7	breast:
4	chr16:79801228..79803127-chr16:80136004..80138998,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10514482	0.95[ASN][1000 genomes]
rs1110762	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16952314	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16952322	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16952343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952388	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952416	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16952436	0.95[ASN][1000 genomes]
rs16952440	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952444	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16952449	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2126994	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126995	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8045816	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80137200-80140200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80137400-80139200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:80137400-80140200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:80137400-80140600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:80137400-80143000	Enhancers	HMEC	breast
6	chr16:80137600-80140000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr16:80138000-80139000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr16:80138000-80139000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:80138000-80139000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr16:80138400-80140000	Enhancers	Fetal Stomach	stomach
12	chr16:80138600-80139000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:80138600-80139200	Enhancers	Fetal Lung	lung
14	chr16:80138600-80139200	Flanking Active TSS	NHEK	skin
15	chr16:80138600-80139400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr16:80138600-80139400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:80138600-80139600	Enhancers	NH-A	brain
18	chr16:80138600-80139600	Enhancers	Osteobl	bone
19	chr16:80138600-80139800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr16:80138800-80139200	Enhancers	HSMM	muscle
21	chr16:80138800-80139400	Enhancers	Placenta	Placenta
22	chr16:80138800-80139600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:80138800-80139600	Enhancers	Muscle Satellite Cultured Cells	--

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