Variant report

Variant	rs16952593
Chromosome Location	chr16:80214478-80214479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DYNLRB2-2	chr16:80214165-80214579	ENSG00000261376.1

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11862554	0.83[AFR][1000 genomes]
rs12102352	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12103219	0.88[AMR][1000 genomes]
rs16952569	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16952595	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16952596	0.98[ASN][1000 genomes]
rs16952602	0.90[ASN][1000 genomes]
rs16952610	0.94[ASN][1000 genomes]
rs16952612	0.96[ASN][1000 genomes]
rs1862698	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1904189	0.82[ASN][1000 genomes]
rs1904190	0.80[ASN][1000 genomes]
rs28396536	0.88[AMR][1000 genomes]
rs4889117	0.96[ASN][1000 genomes]
rs4889118	0.94[ASN][1000 genomes]
rs55916224	0.89[AMR][1000 genomes]
rs58845061	0.92[AFR][1000 genomes]
rs61540470	0.95[ASN][1000 genomes]
rs73573845	0.91[ASN][1000 genomes]
rs73577642	0.84[AMR][1000 genomes]
rs74028037	0.97[ASN][1000 genomes]
rs74028038	0.95[ASN][1000 genomes]
rs74038735	0.82[AFR][1000 genomes]
rs7499082	0.97[ASN][1000 genomes]
rs9934786	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059997	chr16:80209367-80247050	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80210000-80216000	Weak transcription	HSMM	muscle
2	chr16:80210400-80231400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links