Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:80601424..80603816-chr16:80622383..80625289,2	MCF-7	breast:
2	chr16:80621060..80623345-chr16:80635851..80638748,2	MCF-7	breast:
3	chr16:80622034..80624182-chr16:80626322..80628140,2	MCF-7	breast:
4	chr16:80621732..80623861-chr16:80646152..80649105,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260737	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16953982	1.00[MEX][hapmap]
rs4258630	1.00[EUR][1000 genomes]
rs4291914	1.00[EUR][1000 genomes]
rs7186842	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7187446	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7188110	1.00[EUR][1000 genomes]
rs7189758	1.00[EUR][1000 genomes]
rs7191601	1.00[EUR][1000 genomes]
rs7206475	1.00[EUR][1000 genomes]
rs726811	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73580250	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580255	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580262	1.00[EUR][1000 genomes]
rs73580273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580290	1.00[EUR][1000 genomes]
rs73580293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580295	1.00[EUR][1000 genomes]
rs73580299	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588482	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588498	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588500	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74029692	1.00[EUR][1000 genomes]
rs8049769	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8052782	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80615800-80624800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:80619200-80632600	Weak transcription	Hela-S3	cervix
3	chr16:80620000-80624800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:80620400-80624400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:80620400-80624800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:80620600-80624800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr16:80620600-80624800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr16:80620800-80625000	Weak transcription	GM12878-XiMat	blood
9	chr16:80621200-80624400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:80621200-80628200	Weak transcription	Placenta	Placenta

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