Variant report

Variant	rs16956233
Chromosome Location	chr15:72107221-72107222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72097461..72102477-chr15:72104726..72109263,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10518971	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12438558	1.00[ASN][1000 genomes]
rs12438960	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12438985	1.00[ASN][1000 genomes]
rs12439301	1.00[ASN][1000 genomes]
rs12441217	1.00[ASN][1000 genomes]
rs12441866	1.00[ASN][1000 genomes]
rs12442873	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956338	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956379	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956382	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956384	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956391	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956450	1.00[ASN][1000 genomes]
rs16956519	1.00[ASN][1000 genomes]
rs1842666	1.00[ASN][1000 genomes]
rs2054600	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34850275	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35886932	1.00[ASN][1000 genomes]
rs7174582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:72100600-72111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung
4	chr15:72100800-72111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:72101200-72112600	Weak transcription	Right Atrium	heart
6	chr15:72103000-72107400	Weak transcription	Fetal Brain Female	brain
7	chr15:72103400-72114000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:72104800-72109800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:72105600-72112400	Weak transcription	HSMMtube	muscle
10	chr15:72105800-72107400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:72105800-72109800	Weak transcription	Lung	lung
12	chr15:72106000-72114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:72106200-72113800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:72106400-72107600	Enhancers	Fetal Muscle Trunk	muscle
15	chr15:72106400-72110800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:72106800-72107800	Enhancers	Fetal Heart	heart
17	chr15:72106800-72109600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:72106800-72114400	Weak transcription	Fetal Kidney	kidney
19	chr15:72107200-72108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:72107200-72108600	Enhancers	Fetal Brain Male	brain
21	chr15:72107200-72108600	Enhancers	Fetal Muscle Leg	muscle
22	chr15:72107200-72115200	Weak transcription	Fetal Stomach	stomach

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