Variant report

Variant	rs16959021
Chromosome Location	chr15:34626807-34626808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34329481..34332420-chr15:34625067..34627371,2	K562	blood:
2	chr15:34626796..34628377-chr15:34649112..34652053,2	MCF-7	breast:
3	chr15:34626147..34627854-chr15:34654985..34656962,2	K562	blood:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction
ENSG00000176454	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs104017	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1045194	0.81[AMR][1000 genomes]
rs1045204	0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap]
rs1045238	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1133154	0.94[GIH][hapmap]
rs11631094	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs12591967	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12592913	0.90[ASN][1000 genomes]
rs12593384	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594569	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs12595504	0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.92[ASN][1000 genomes]
rs168335	0.84[ASN][1000 genomes]
rs16958878	0.94[GIH][hapmap]
rs16958910	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958954	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958989	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs16958995	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959014	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959020	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs180886	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1845773	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs186987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085966	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2126421	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2219668	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2615357	0.87[ASN][1000 genomes]
rs2644243	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs2644245	0.92[ASN][1000 genomes]
rs2644247	0.82[CHB][hapmap];0.92[CHD][hapmap]
rs2705343	0.81[CHD][hapmap]
rs2705348	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs28539755	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3063	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34639726	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs347805	0.87[ASN][1000 genomes]
rs347806	0.83[ASN][1000 genomes]
rs347807	0.83[ASN][1000 genomes]
rs347817	0.85[ASN][1000 genomes]
rs347818	0.82[CHB][hapmap];0.92[CHD][hapmap]
rs347819	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs347827	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs347830	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs347831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347834	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347835	0.86[ASN][1000 genomes]
rs347836	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs347837	0.90[ASN][1000 genomes]
rs347838	0.90[ASN][1000 genomes]
rs347842	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs347843	0.89[ASN][1000 genomes]
rs347845	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs347846	0.82[CHB][hapmap]
rs347847	0.86[ASN][1000 genomes]
rs347848	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs347849	0.94[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs347851	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs347856	0.80[ASN][1000 genomes]
rs347858	0.89[ASN][1000 genomes]
rs347860	0.83[ASN][1000 genomes]
rs347861	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs347866	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs347867	0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs380248	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs405080	0.87[ASN][1000 genomes]
rs422388	0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4238572	0.91[GIH][hapmap]
rs426634	0.94[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs436552	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs440025	0.84[ASN][1000 genomes]
rs449053	0.84[ASN][1000 genomes]
rs4569235	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55745608	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56057955	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56207527	0.81[ASN][1000 genomes]
rs56388838	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56762274	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57715165	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57875866	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58343025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59375529	0.83[ASN][1000 genomes]
rs59452641	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59802332	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59861881	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60114685	0.88[ASN][1000 genomes]
rs60156693	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60539207	0.88[ASN][1000 genomes]
rs61376537	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495660	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495661	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495662	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163919	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7164902	0.82[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs7166043	0.86[ASN][1000 genomes]
rs7166066	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169857	0.92[ASN][1000 genomes]
rs7170785	0.92[ASN][1000 genomes]
rs7175028	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176009	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176426	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7181260	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7182584	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72486679	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374434	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73374455	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374473	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374475	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374477	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374490	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73374491	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73374493	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73374500	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73374502	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73376010	0.92[ASN][1000 genomes]
rs73390084	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73392004	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7495538	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs756086	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs8023583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025057	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8028600	0.85[JPT][hapmap]
rs8031145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031404	0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.92[ASN][1000 genomes]
rs8031958	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031961	0.90[ASN][1000 genomes]
rs8032347	0.94[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs8033032	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037379	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038177	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs8041425	0.80[ASN][1000 genomes]
rs8042163	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043005	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs924065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9972305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972323	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs16959021	PGBD4	cis	cerebellum	SCAN
rs16959021	NOP10	cis	cerebellum	SCAN
rs16959021	NOP10	cis	Stomach	GTEx
rs16959021	NOP10	cis	Esophagus Muscularis	GTEx
rs16959021	SLC12A6	cis	Thyroid	GTEx
rs16959021	TMEM85	cis	cerebellum	SCAN
rs16959021	NOP10	cis	Skin Sun Exposed Lower leg	GTEx
rs16959021	NOLA3	cis	multi-tissue	Pritchard
rs16959021	NOP10	cis	Nerve Tibial	GTEx
rs16959021	NOP10	cis	parietal	SCAN
rs16959021	NOP10	cis	Muscle Skeletal	GTEx
rs16959021	NOP10	cis	Esophagus Mucosa	GTEx
rs16959021	NOP10	cis	Artery Tibial	GTEx
rs16959021	NOP10	cis	Thyroid	GTEx
rs16959021	OTUD7A	cis	cerebellum	SCAN
rs16959021	NOP10	cis	Heart Left Ventricle	GTEx

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34611000-34628600	Weak transcription	Lung	lung
2	chr15:34611200-34629200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:34614600-34628600	Weak transcription	Psoas Muscle	Psoas
4	chr15:34616200-34628600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:34618400-34627800	Weak transcription	Left Ventricle	heart
6	chr15:34619800-34628600	Weak transcription	Pancreas	Pancrea
7	chr15:34621000-34628200	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:34621600-34627000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:34621800-34628000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:34622200-34628600	Weak transcription	Placenta	Placenta
11	chr15:34622600-34627000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:34622600-34627000	Weak transcription	NHLF	lung
13	chr15:34622800-34627000	Weak transcription	NHDF-Ad	bronchial
14	chr15:34623600-34629800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:34624400-34629200	Weak transcription	Fetal Intestine Large	intestine
16	chr15:34624800-34627800	Weak transcription	Fetal Lung	lung
17	chr15:34625400-34628400	Active TSS	GM12878-XiMat	blood
18	chr15:34625600-34627200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr15:34625600-34627200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:34625600-34629000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr15:34625600-34629200	Enhancers	Fetal Heart	heart
22	chr15:34625600-34629600	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:34625800-34627200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr15:34625800-34627200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr15:34625800-34627600	Enhancers	Brain Germinal Matrix	brain
26	chr15:34625800-34629000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr15:34625800-34630000	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr15:34626000-34627200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr15:34626200-34627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:34626200-34627000	Enhancers	Dnd41	blood
31	chr15:34626200-34627200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:34626200-34627600	Enhancers	Hela-S3	cervix
33	chr15:34626200-34627800	Weak transcription	Spleen	Spleen
34	chr15:34626200-34628200	Flanking Active TSS	HUVEC	blood vessel
35	chr15:34626200-34629200	Enhancers	K562	blood
36	chr15:34626400-34627000	Active TSS	Right Atrium	heart
37	chr15:34626400-34627200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:34626400-34627200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:34626400-34627200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:34626400-34627200	Enhancers	HSMM	muscle
41	chr15:34626400-34627400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:34626400-34627400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:34626400-34627400	Weak transcription	Fetal Brain Male	brain
44	chr15:34626400-34627800	Active TSS	Primary T cells fromperipheralblood	blood
45	chr15:34626400-34627800	Enhancers	Brain Angular Gyrus	brain
46	chr15:34626400-34627800	Enhancers	Brain Substantia Nigra	brain
47	chr15:34626400-34627800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr15:34626400-34628400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr15:34626400-34628600	Active TSS	Thymus	Thymus
50	chr15:34626400-34629000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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