Variant report

Variant	rs16961326
Chromosome Location	chr18:28711268-28711269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11874340	1.00[EUR][1000 genomes]
rs11874916	0.82[EUR][1000 genomes]
rs11876103	1.00[CEU][hapmap]
rs11877259	0.82[EUR][1000 genomes]
rs16961206	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16961253	1.00[EUR][1000 genomes]
rs16961254	1.00[EUR][1000 genomes]
rs16961256	1.00[EUR][1000 genomes]
rs16961328	0.92[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961331	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16961333	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1816634	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2156495	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2156761	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58689925	1.00[EUR][1000 genomes]
rs58911015	1.00[EUR][1000 genomes]
rs59270371	1.00[EUR][1000 genomes]
rs59683603	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6506883	0.82[EUR][1000 genomes]
rs7233226	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7235130	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7244822	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415516	0.82[EUR][1000 genomes]
rs73415572	1.00[EUR][1000 genomes]
rs73415573	1.00[EUR][1000 genomes]
rs73415585	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421614	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421636	1.00[EUR][1000 genomes]
rs73421639	1.00[EUR][1000 genomes]
rs73954515	1.00[EUR][1000 genomes]
rs8086137	1.00[CEU][hapmap];0.85[LWK][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086813	0.82[EUR][1000 genomes]
rs985861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985862	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9957742	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519734	chr18:28707415-28721534	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28710600-28740800	Weak transcription	Primary T cells from cord blood	blood
2	chr18:28711200-28712600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links