Variant report

Variant	rs16961510
Chromosome Location	chr18:28821136-28821137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:28682311..28684139-chr18:28820172..28823004,2	MCF-7	breast:
2	chr18:28820916..28822485-chr18:29145187..29146692,2	K562	blood:
3	chr18:28821038..28822802-chr18:28823985..28826014,2	MCF-7	breast:
4	chr18:28736989..28739079-chr18:28820985..28823154,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134755	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10502561	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502563	1.00[AMR][1000 genomes]
rs10502564	0.97[AFR][1000 genomes]
rs1346166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1365291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961508	1.00[AMR][1000 genomes]
rs16961517	1.00[AMR][1000 genomes]
rs16961522	1.00[AMR][1000 genomes]
rs16961523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961528	1.00[AMR][1000 genomes]
rs16961531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961539	1.00[AMR][1000 genomes]
rs16961544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35162901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58788919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59401819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60163794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60546751	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60880428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61049172	1.00[AMR][1000 genomes]
rs6506902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7241480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7241623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7241921	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242340	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7242348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28814000-28822400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr18:28814200-28821400	Weak transcription	Fetal Kidney	kidney
3	chr18:28820200-28826000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr18:28820400-28821200	Enhancers	NHEK	skin
5	chr18:28820400-28821600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr18:28820400-28821800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr18:28820400-28823800	Enhancers	HepG2	liver
8	chr18:28820400-28824800	Enhancers	HMEC	breast
9	chr18:28820600-28821400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:28820600-28821400	Enhancers	Pancreas	Pancrea
11	chr18:28820600-28821400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr18:28820600-28821600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr18:28820600-28822000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr18:28820600-28822200	Enhancers	Placenta	Placenta
15	chr18:28820600-28822800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr18:28820600-28824600	Enhancers	Fetal Intestine Large	intestine
17	chr18:28820600-28824600	Enhancers	Fetal Intestine Small	intestine
18	chr18:28820600-28828000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr18:28820800-28821400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr18:28820800-28821800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr18:28820800-28822000	Enhancers	A549	lung
22	chr18:28820800-28822600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr18:28820800-28823600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:28820800-28826200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr18:28821000-28822400	Enhancers	Duodenum Mucosa	Duodenum
26	chr18:28821000-28822600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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