Variant report

Variant rs16961522
Chromosome Location chr18:28825805-28825806
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:28820200-28826000 Enhancers Breast Myoepithelial Primary Cells Breast
2 chr18:28820600-28828000 Enhancers HUES6 Cell Line embryonic stem cell
3 chr18:28820800-28826200 Enhancers HUES64 Cell Line embryonic stem cell
4 chr18:28821200-28826000 Enhancers ES-I3 Cell Line embryonic stem cell
5 chr18:28822200-28826800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr18:28823200-28826000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr18:28823800-28826000 Enhancers iPS-15b Cell Line embryonic stem cell
8 chr18:28824000-28826200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
9 chr18:28824200-28826000 Enhancers Fetal Lung lung
10 chr18:28824200-28826400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr18:28824200-28827000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr18:28824200-28827600 Weak transcription Pancreas Pancrea
13 chr18:28824600-28826000 Enhancers Brain Germinal Matrix brain
14 chr18:28824800-28830200 Weak transcription Left Ventricle heart
15 chr18:28825000-28826000 Enhancers Cortex derived primary cultured neurospheres brain
16 chr18:28825000-28826800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr18:28825200-28826000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr18:28825200-28826000 Enhancers Stomach Mucosa stomach
19 chr18:28825200-28826000 Enhancers Hela-S3 cervix
20 chr18:28825200-28826200 Enhancers Fetal Intestine Small intestine
21 chr18:28825200-28826200 Enhancers Rectal Mucosa Donor 31 rectum
22 chr18:28825200-28826200 Enhancers HMEC breast
23 chr18:28825200-28826200 Enhancers NHEK skin
24 chr18:28825200-28826600 Enhancers Fetal Intestine Large intestine
25 chr18:28825200-28826600 Enhancers Fetal Kidney kidney
26 chr18:28825200-28835400 Weak transcription Right Atrium heart
27 chr18:28825400-28826200 Enhancers Duodenum Smooth Muscle Duodenum
28 chr18:28825400-28826600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr18:28825400-28826600 Weak transcription Placenta Amnion Placenta Amnion
30 chr18:28825400-28827400 Weak transcription Liver Liver
31 chr18:28825400-28828000 Enhancers GM12878-XiMat blood
32 chr18:28825600-28826000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
33 chr18:28825800-28826000 Enhancers Colonic Mucosa Colon
34 chr18:28825800-28826000 Enhancers NH-A brain
35 chr18:28825800-28826600 Enhancers HepG2 liver
36 chr18:28825800-28827600 Weak transcription A549 lung

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