Variant report

Variant	rs16961528
Chromosome Location	chr18:28828139-28828140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502561	1.00[AMR][1000 genomes]
rs10502562	1.00[AMR][1000 genomes]
rs10502563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1346166	1.00[AMR][1000 genomes]
rs1365291	1.00[AMR][1000 genomes]
rs16961508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961510	1.00[AMR][1000 genomes]
rs16961517	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs16961522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961523	1.00[AMR][1000 genomes]
rs16961525	1.00[AMR][1000 genomes]
rs16961526	1.00[AMR][1000 genomes]
rs16961531	1.00[AMR][1000 genomes]
rs16961534	1.00[AMR][1000 genomes]
rs16961535	1.00[AMR][1000 genomes]
rs16961539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961544	1.00[AMR][1000 genomes]
rs35162901	1.00[AMR][1000 genomes]
rs58788919	1.00[AMR][1000 genomes]
rs59401819	1.00[AMR][1000 genomes]
rs60163794	1.00[AMR][1000 genomes]
rs60546751	1.00[AMR][1000 genomes]
rs60880428	1.00[AMR][1000 genomes]
rs61049172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6506902	1.00[AMR][1000 genomes]
rs7241480	1.00[AMR][1000 genomes]
rs7241623	1.00[AMR][1000 genomes]
rs7241921	1.00[AMR][1000 genomes]
rs7242340	1.00[AMR][1000 genomes]
rs7242348	1.00[AMR][1000 genomes]
rs8095737	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28824800-28830200	Weak transcription	Left Ventricle	heart
2	chr18:28825200-28835400	Weak transcription	Right Atrium	heart
3	chr18:28826000-28829000	Weak transcription	NH-A	brain
4	chr18:28826000-28831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:28826200-28828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:28826200-28830200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr18:28826800-28828200	Enhancers	Hela-S3	cervix
8	chr18:28827000-28828800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:28827000-28841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:28827400-28828200	Enhancers	Liver	Liver
11	chr18:28827400-28828600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr18:28827400-28830000	Enhancers	HMEC	breast
13	chr18:28827600-28829000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr18:28827600-28829000	Enhancers	NHEK	skin
15	chr18:28827600-28829800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr18:28827600-28831600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:28827800-28828200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr18:28827800-28828600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr18:28827800-28832400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:28827800-28835400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr18:28828000-28830400	Weak transcription	A549	lung
22	chr18:28828000-28835600	Weak transcription	GM12878-XiMat	blood
23	chr18:28828000-28841400	Weak transcription	Placenta Amnion	Placenta Amnion

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