The 2.0 version of rSNPBase

Variant report

Variant rs16962698
Chromosome Location chr18:29692321-29692322
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29673400-29692800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr18:29673400-29713800 Weak transcription Spleen Spleen
3 chr18:29673800-29702000 Weak transcription Pancreas Pancrea
4 chr18:29673800-29714000 Weak transcription Esophagus oesophagus
5 chr18:29673800-29714200 Weak transcription Ovary ovary
6 chr18:29673800-29715200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr18:29673800-29715200 Weak transcription Lung lung
8 chr18:29673800-29715800 Weak transcription Colonic Mucosa Colon
9 chr18:29673800-29717000 Weak transcription HSMMtube muscle
10 chr18:29674000-29692600 Weak transcription Placenta Placenta
11 chr18:29674000-29712000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr18:29674200-29692800 Weak transcription HSMM muscle
13 chr18:29674200-29693000 Weak transcription Fetal Muscle Trunk muscle
14 chr18:29674600-29695600 Weak transcription Rectal Smooth Muscle rectum
15 chr18:29674600-29703000 Weak transcription Osteobl bone
16 chr18:29674600-29705600 Weak transcription NHLF lung
17 chr18:29675000-29694600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr18:29675000-29717200 Weak transcription NH-A brain
19 chr18:29675200-29692800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr18:29675400-29693200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr18:29675400-29693200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr18:29676000-29693000 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr18:29676200-29697200 Weak transcription NHDF-Ad bronchial
24 chr18:29676400-29693200 Weak transcription Fetal Lung lung
25 chr18:29676400-29707000 Weak transcription Brain Angular Gyrus brain
26 chr18:29676600-29704800 Weak transcription Brain Inferior Temporal Lobe brain
27 chr18:29676800-29697400 Weak transcription Muscle Satellite Cultured Cells --
28 chr18:29676800-29704600 Weak transcription Fetal Brain Female brain
29 chr18:29676800-29705000 Weak transcription Brain Hippocampus Middle brain
30 chr18:29676800-29717200 Weak transcription Brain Germinal Matrix brain
31 chr18:29677000-29696800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr18:29677000-29713800 Weak transcription Small Intestine intestine
33 chr18:29677000-29715600 Weak transcription Fetal Heart heart
34 chr18:29677000-29717000 Weak transcription Aorta Aorta
35 chr18:29677200-29692400 Weak transcription Left Ventricle heart
36 chr18:29677400-29694600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr18:29678200-29692400 Weak transcription Thymus Thymus
38 chr18:29678200-29693000 Weak transcription Fetal Muscle Leg muscle
39 chr18:29679800-29692400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr18:29680000-29692600 Weak transcription Adipose Nuclei Adipose
41 chr18:29680000-29693400 Weak transcription A549 lung
42 chr18:29681600-29692800 Weak transcription Liver Liver
43 chr18:29683400-29692600 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr18:29683400-29694800 Weak transcription Hela-S3 cervix
45 chr18:29684200-29692600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr18:29686200-29693000 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr18:29687000-29692400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr18:29687200-29713600 Strong transcription Dnd41 blood
49 chr18:29688000-29695000 Genic enhancers Primary T helper cells PMA-I stimulated --
50 chr18:29688200-29706400 Strong transcription Fetal Thymus thymus

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Last update: Aug 31, 2015