Variant report

Variant	rs16963529
Chromosome Location	chr18:30122578-30122579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10468905	0.93[AFR][1000 genomes]
rs10468906	1.00[AFR][1000 genomes]
rs16963531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963547	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30121800-30122600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:30121800-30122600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:30121800-30122600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:30122000-30122600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:30122000-30122600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:30122000-30122600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:30122000-30122800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr18:30122200-30122600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:30122200-30122600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:30122200-30122600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr18:30122200-30122600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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