Variant report

Variant	rs16963531
Chromosome Location	chr18:30123122-30123123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10468905	0.85[YRI][hapmap];0.93[AFR][1000 genomes]
rs10468906	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs16963529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963547	0.85[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30122600-30123400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:30122600-30126600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:30122600-30127800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:30122600-30133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:30122800-30123200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links