Variant report

Variant	rs16963927
Chromosome Location	chr17:34204807-34204808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34136067..34137819-chr17:34202114..34205071,2	K562	blood:

Variant related genes	Relation type
ENSG00000172660	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10451309	0.89[GIH][hapmap];1.00[TSI][hapmap]
rs1065341	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971570	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971585	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971624	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735479	0.95[EUR][1000 genomes]
rs2735482	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2735483	0.95[EUR][1000 genomes]
rs28912069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28914812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914818	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251704	0.93[GIH][hapmap];1.00[TSI][hapmap]
rs4251710	0.92[GIH][hapmap];1.00[TSI][hapmap]
rs4251744	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59536691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61590868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224965	0.97[EUR][1000 genomes]
rs8073456	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs965984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9674851	1.00[CEU][hapmap]
rs9895464	1.00[CEU][hapmap]
rs9896368	0.87[TSI][hapmap]
rs9898128	1.00[CEU][hapmap]
rs9914929	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34185800-34206800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:34194000-34205800	Weak transcription	K562	blood
5	chr17:34198400-34205400	Weak transcription	Pancreas	Pancrea
6	chr17:34198800-34206800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:34198800-34206800	Weak transcription	Placenta	Placenta
8	chr17:34199200-34207200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:34202400-34206000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:34202400-34206200	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:34202600-34207800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr17:34202800-34205200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:34202800-34206800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr17:34203200-34206800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr17:34203600-34206800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:34203800-34205400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr17:34203800-34205800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:34203800-34207000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:34203800-34207000	Weak transcription	Adipose Nuclei	Adipose
20	chr17:34203800-34207000	Weak transcription	Spleen	Spleen
21	chr17:34203800-34207800	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr17:34204000-34205000	Enhancers	Primary T cells from cord blood	blood
23	chr17:34204000-34205000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:34204000-34207000	Weak transcription	Fetal Thymus	thymus
25	chr17:34204000-34207000	Weak transcription	HUVEC	blood vessel
26	chr17:34204000-34207200	Active TSS	Primary T cells fromperipheralblood	blood
27	chr17:34204000-34207200	Weak transcription	Right Atrium	heart
28	chr17:34204400-34207600	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr17:34204800-34205000	Enhancers	HepG2	liver
30	chr17:34204800-34206800	Enhancers	GM12878-XiMat	blood
31	chr17:34204800-34207400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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