Variant report

Variant	rs16964017
Chromosome Location	chr18:30459553-30459554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12104007	1.00[AMR][1000 genomes]
rs16963999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964036	1.00[AMR][1000 genomes]
rs16964062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964082	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964115	1.00[AMR][1000 genomes]
rs16964116	1.00[AMR][1000 genomes]
rs16964117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28458243	1.00[AMR][1000 genomes]
rs28496433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516912	0.96[AFR][1000 genomes]
rs28771668	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742357	1.00[AMR][1000 genomes]
rs56017479	1.00[AMR][1000 genomes]
rs60730880	0.96[AFR][1000 genomes]
rs60766333	1.00[AFR][1000 genomes]
rs61164044	1.00[AMR][1000 genomes]
rs9783891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9944992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9945125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947074	1.00[AMR][1000 genomes]
rs9949048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9951977	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9953097	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9963068	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9965451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30458000-30462800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:30458200-30461200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:30458200-30466200	Enhancers	Primary B cells from peripheral blood	blood
4	chr18:30458200-30466400	Enhancers	Primary B cells from cord blood	blood
5	chr18:30458400-30459800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:30458400-30460800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:30458600-30459800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:30458800-30459600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:30459000-30460000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:30459000-30462800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:30459200-30460000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr18:30459200-30460000	Enhancers	NH-A	brain
13	chr18:30459200-30460200	Enhancers	Fetal Kidney	kidney
14	chr18:30459200-30460400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:30459200-30460600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:30459400-30459800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:30459400-30460400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr18:30459400-30460800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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