Variant report

Variant	rs16964058
Chromosome Location	chr18:30471456-30471457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16964115	0.89[AFR][1000 genomes]
rs16964116	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30468400-30471600	Weak transcription	Fetal Intestine Large	intestine
2	chr18:30469800-30475200	Weak transcription	Pancreas	Pancrea
3	chr18:30470000-30471600	Weak transcription	HepG2	liver
4	chr18:30470600-30473600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr18:30470800-30471800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:30471200-30472200	Enhancers	Primary B cells from peripheral blood	blood
7	chr18:30471200-30472600	Enhancers	Primary B cells from cord blood	blood
8	chr18:30471400-30471800	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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