Variant report

Variant	rs16964062
Chromosome Location	chr18:30471980-30471981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12104007	1.00[AMR][1000 genomes]
rs16963999	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964036	1.00[AMR][1000 genomes]
rs16964082	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964115	1.00[AMR][1000 genomes]
rs16964116	1.00[AMR][1000 genomes]
rs16964117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28458243	1.00[AMR][1000 genomes]
rs28496433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516912	0.88[AFR][1000 genomes]
rs28771668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742357	1.00[AMR][1000 genomes]
rs56017479	1.00[AMR][1000 genomes]
rs60730880	0.88[AFR][1000 genomes]
rs60766333	0.92[AFR][1000 genomes]
rs61164044	1.00[AMR][1000 genomes]
rs9783891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9944992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9945125	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947074	1.00[AMR][1000 genomes]
rs9949048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949112	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9951977	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9953097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9963068	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9965451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30469800-30475200	Weak transcription	Pancreas	Pancrea
2	chr18:30470600-30473600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:30471200-30472200	Enhancers	Primary B cells from peripheral blood	blood
4	chr18:30471200-30472600	Enhancers	Primary B cells from cord blood	blood
5	chr18:30471600-30472000	Enhancers	Fetal Intestine Large	intestine
6	chr18:30471600-30472200	Enhancers	HepG2	liver
7	chr18:30471800-30472000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:30471800-30472800	Enhancers	Dnd41	blood

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