Variant report

Variant	rs16965360
Chromosome Location	chr17:37985432-37985433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37980608..37984471-chr17:37984850..37987192,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35829084	1.00[AMR][1000 genomes]
rs61253581	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61744726	1.00[AMR][1000 genomes]
rs7212976	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7213118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7215617	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7220943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37979400-37986600	ZNF genes & repeats	GM12878-XiMat	blood
2	chr17:37979400-37991800	Weak transcription	Gastric	stomach
3	chr17:37980200-37986600	Strong transcription	Primary T cells from cord blood	blood
4	chr17:37980600-37985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:37980600-37986400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:37980600-37986600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:37980800-37985800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:37981000-37987200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:37981000-37987400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:37981400-37985800	Strong transcription	Fetal Thymus	thymus
11	chr17:37981400-37987200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:37981600-37988600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:37981800-37986600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
14	chr17:37981800-37988000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr17:37982000-37987600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:37982400-37991000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr17:37982600-37985800	Strong transcription	Thymus	Thymus
18	chr17:37982600-37993800	Strong transcription	Primary B cells from cord blood	blood
19	chr17:37982800-37985600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
20	chr17:37984400-37993400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr17:37985000-37990400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:37985000-37991200	Weak transcription	Spleen	Spleen
23	chr17:37985000-37994800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:37985000-37996200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr17:37985200-37985600	Enhancers	Liver	Liver
26	chr17:37985200-37985600	Enhancers	HepG2	liver
27	chr17:37985400-37991200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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