Variant report
| Variant | rs16965523 |
|---|---|
| Chromosome Location | chr15:53410841-53410842 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:53406863..53408730-chr15:53409145..53411501,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000259237 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12148106 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12148408 | 1.00[CEU][hapmap] |
| rs1508034 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1508035 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965603 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965675 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965678 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965695 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949097 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28416159 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28446966 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28526360 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28539911 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28557174 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28566909 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28690629 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28706517 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848136 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74016429 | 0.84[AFR][1000 genomes] |
| rs8026349 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8029569 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8039214 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9920505 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9920833 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833007 | chr15:53264564-53453525 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv904221 | chr15:53279378-53434365 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3343986 | chr15:53284440-53571936 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1037630 | chr15:53324645-53708925 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv1050535 | chr15:53352572-53472957 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 6 | nsv1039762 | chr15:53354285-53414479 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
