Variant report

Variant	rs16965677
Chromosome Location	chr15:53495516-53495517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57717458	1.00[EUR][1000 genomes]
rs58972964	1.00[EUR][1000 genomes]
rs60615330	1.00[EUR][1000 genomes]
rs60799783	1.00[EUR][1000 genomes]
rs60841107	1.00[EUR][1000 genomes]
rs73402090	1.00[EUR][1000 genomes]
rs73403616	1.00[EUR][1000 genomes]
rs73403621	1.00[EUR][1000 genomes]
rs73403630	1.00[EUR][1000 genomes]
rs73403632	1.00[EUR][1000 genomes]
rs73403635	1.00[EUR][1000 genomes]
rs73403645	1.00[EUR][1000 genomes]
rs73403662	1.00[EUR][1000 genomes]
rs73403677	1.00[EUR][1000 genomes]
rs73403683	1.00[EUR][1000 genomes]
rs73403684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53489000-53496000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:53490400-53495600	Weak transcription	Liver	Liver
3	chr15:53490400-53495800	Weak transcription	HepG2	liver
4	chr15:53493200-53497200	Enhancers	Dnd41	blood
5	chr15:53493400-53496800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:53493400-53497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:53493800-53496600	Enhancers	Fetal Thymus	thymus
8	chr15:53493800-53496600	Enhancers	Thymus	Thymus
9	chr15:53493800-53497400	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:53494800-53495600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:53495000-53496400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:53495000-53496400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr15:53495000-53496400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:53495000-53496400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:53495000-53498800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:53495200-53495600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:53495200-53495800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr15:53495200-53496200	Enhancers	Pancreas	Pancrea
19	chr15:53495200-53496400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:53495200-53496400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr15:53495200-53496600	Enhancers	Psoas Muscle	Psoas
22	chr15:53495200-53503000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:53495400-53495600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links