Variant report

Variant	rs16966102
Chromosome Location	chr15:53740219-53740220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53737930..53740530-chr15:53745920..53747519,3	MCF-7	breast:
2	chr15:53732985..53735418-chr15:53739615..53741150,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1516403	0.94[ASN][1000 genomes]
rs4776150	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049319	chr15:53671945-53785267	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1050374	chr15:53674726-53785267	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53730800-53740400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:53735400-53745200	Enhancers	HepG2	liver
3	chr15:53739000-53741000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr15:53739200-53740400	Weak transcription	Fetal Kidney	kidney
5	chr15:53739200-53740600	Enhancers	Liver	Liver
6	chr15:53739200-53740800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr15:53739200-53741200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr15:53739400-53741000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:53739400-53741000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:53739600-53740800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:53739600-53740800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:53739600-53740800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:53739600-53740800	Enhancers	Pancreas	Pancrea
14	chr15:53739600-53741000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:53739600-53741000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:53739600-53741000	Enhancers	Brain Germinal Matrix	brain
17	chr15:53739800-53741200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:53739800-53745000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:53740000-53740400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:53740000-53740400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:53740200-53740400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:53740200-53740600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:53740200-53741200	Enhancers	Cortex derived primary cultured neurospheres	brain

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