Variant report

Variant	rs16968041
Chromosome Location	chr15:76552155-76552156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16967932	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
2	chr15:76510400-76555000	Weak transcription	NH-A	brain
3	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:76517600-76553800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:76522400-76554400	Weak transcription	Fetal Heart	heart
7	chr15:76524200-76553000	Weak transcription	NHDF-Ad	bronchial
8	chr15:76535400-76553000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:76535600-76555200	Weak transcription	Brain Substantia Nigra	brain
10	chr15:76539000-76555600	Weak transcription	HUVEC	blood vessel
11	chr15:76545400-76555400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:76546200-76553600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:76546200-76554800	Strong transcription	Hela-S3	cervix
14	chr15:76546200-76555200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:76546200-76556000	Strong transcription	A549	lung
16	chr15:76546800-76554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:76546800-76558200	Weak transcription	Brain Angular Gyrus	brain
18	chr15:76547000-76554600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:76548000-76555000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:76549000-76555200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:76549400-76554600	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:76549400-76555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:76549600-76555000	Weak transcription	Fetal Kidney	kidney
24	chr15:76550000-76553600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:76550400-76554200	Strong transcription	Fetal Lung	lung
26	chr15:76550400-76563000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:76550600-76552200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:76550600-76552400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:76550600-76553200	Strong transcription	Esophagus	oesophagus
30	chr15:76550600-76553200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr15:76550600-76553800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:76550600-76553800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:76550600-76553800	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr15:76550600-76554000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:76550600-76554000	Strong transcription	Aorta	Aorta
36	chr15:76550600-76554000	Strong transcription	Brain Anterior Caudate	brain
37	chr15:76550600-76554000	Strong transcription	Colonic Mucosa	Colon
38	chr15:76550600-76554000	Strong transcription	Gastric	stomach
39	chr15:76550600-76554000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:76550600-76554200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:76550600-76554200	ZNF genes & repeats	Lung	lung
42	chr15:76550600-76554200	Strong transcription	Pancreas	Pancrea
43	chr15:76550600-76554400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:76550600-76554400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr15:76550600-76554600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr15:76550600-76554600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:76550600-76554600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:76550600-76554600	Strong transcription	Ovary	ovary
49	chr15:76550600-76554800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:76550600-76555000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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