Variant report

Variant	rs16968242
Chromosome Location	chr15:76740219-76740220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1111257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157763	0.82[MEX][hapmap]
rs157766	0.82[MEX][hapmap]
rs157780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968120	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16968160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968215	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968254	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968316	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429680	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461510	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284908	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573845	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605733	1.00[ASN][1000 genomes]
rs28721404	1.00[ASN][1000 genomes]
rs28808106	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886726	1.00[ASN][1000 genomes]
rs3743175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265327	1.00[ASN][1000 genomes]
rs59195449	1.00[ASN][1000 genomes]
rs62026890	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026892	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026896	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026900	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026901	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026904	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026906	1.00[ASN][1000 genomes]
rs62028170	1.00[ASN][1000 genomes]
rs62028377	0.97[EUR][1000 genomes]
rs62028381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028382	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028386	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028389	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028401	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62028402	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028403	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028407	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62028409	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028410	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62028411	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028413	1.00[EUR][1000 genomes]
rs62028416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62028417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028419	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028420	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028421	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028427	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028428	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028431	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028433	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030360	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030372	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030427	1.00[ASN][1000 genomes]
rs731731	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024121	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs8038984	0.88[EUR][1000 genomes]
rs8039601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:76725800-76754400	Weak transcription	Ovary	ovary
6	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
7	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:76732200-76741200	Weak transcription	Fetal Brain Male	brain
9	chr15:76736600-76741000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:76739400-76740600	Enhancers	Fetal Intestine Small	intestine
11	chr15:76739800-76740600	Enhancers	Fetal Intestine Large	intestine
12	chr15:76740200-76740800	Enhancers	Colonic Mucosa	Colon
13	chr15:76740200-76740800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr15:76740200-76741000	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links