Variant report

Variant	rs16968254
Chromosome Location	chr15:76742519-76742520
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1111257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157780	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607016	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968120	0.91[ASN][1000 genomes]
rs16968160	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968201	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968212	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968231	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968233	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968242	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968311	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968319	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968335	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968336	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16968364	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462564	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429680	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461510	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284908	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28573845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28591605	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605733	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28721404	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28808106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28886726	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743175	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55903433	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57311619	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58265327	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59195449	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026890	1.00[ASN][1000 genomes]
rs62026892	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62026893	1.00[ASN][1000 genomes]
rs62026896	1.00[ASN][1000 genomes]
rs62026900	1.00[ASN][1000 genomes]
rs62026901	1.00[ASN][1000 genomes]
rs62026904	1.00[ASN][1000 genomes]
rs62026906	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028170	1.00[ASN][1000 genomes]
rs62028171	1.00[ASN][1000 genomes]
rs62028377	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62028381	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028382	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028384	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028386	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028389	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028401	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62028402	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028403	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62028409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028410	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62028411	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028413	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62028416	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62028417	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028418	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028419	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028421	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028422	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028427	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028428	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028430	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028431	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028433	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028437	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62028439	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030360	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030361	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030370	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030371	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030372	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030373	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030374	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030411	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030412	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030415	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030416	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030417	1.00[ASN][1000 genomes]
rs62030424	1.00[ASN][1000 genomes]
rs62030427	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731731	1.00[ASN][1000 genomes]
rs74024121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024154	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038119	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038984	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8039601	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041308	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:76725800-76754400	Weak transcription	Ovary	ovary
6	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
7	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
9	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
10	chr15:76741400-76743000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:76742000-76742800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr15:76742200-76742600	Enhancers	Rectal Mucosa Donor 29	rectum

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