Variant report

Variant	rs16968349
Chromosome Location	chr15:76826762-76826763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12101929	1.00[GIH][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2468124	1.00[EUR][1000 genomes]
rs28509286	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28646074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28835608	0.93[YRI][hapmap]
rs28872583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55666147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56312206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168735	1.00[AMR][1000 genomes]
rs7169825	1.00[AMR][1000 genomes]
rs7174835	0.80[LWK][hapmap];1.00[AMR][1000 genomes]
rs74024123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024164	1.00[EUR][1000 genomes]
rs8025581	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027086	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032219	1.00[AMR][1000 genomes]
rs9783735	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv3312332	chr15:76826004-76827618	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3312333	chr15:76826018-76827616	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76805600-76845800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:76819400-76828400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:76825000-76826800	Enhancers	Fetal Intestine Small	intestine
4	chr15:76825000-76826800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr15:76825000-76826800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr15:76825200-76826800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr15:76825200-76826800	Enhancers	Stomach Mucosa	stomach
8	chr15:76825200-76826800	Enhancers	A549	lung
9	chr15:76825200-76826800	Enhancers	HepG2	liver
10	chr15:76825400-76827600	Enhancers	Fetal Stomach	stomach
11	chr15:76825600-76826800	Enhancers	Fetal Intestine Large	intestine
12	chr15:76826000-76826800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr15:76826000-76826800	Enhancers	Fetal Lung	lung
14	chr15:76826000-76826800	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr15:76826000-76826800	Enhancers	Small Intestine	intestine
16	chr15:76826400-76826800	Enhancers	Colon Smooth Muscle	Colon
17	chr15:76826400-76827000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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