Variant report

Variant	rs16970356
Chromosome Location	chr15:79256471-79256472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12443215	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002832	1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3759857	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421942	1.00[JPT][hapmap]
rs4628927	1.00[JPT][hapmap]
rs4778730	1.00[CEU][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs61117503	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7163131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:79250800-79263400	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:79253000-79260400	Weak transcription	Pancreas	Pancrea
5	chr15:79253000-79265400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:79253800-79263400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:79254200-79263400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:79256200-79260600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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