Variant report

Variant	rs16971624
Chromosome Location	chr17:34211429-34211430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:34135250..34138000-chr17:34208136..34212043,3	K562	blood:
2	chr17:34211391..34213813-chr17:34217158..34219522,2	MCF-7	breast:
3	chr17:34203987..34208838-chr17:34211046..34215665,5	K562	blood:
4	chr17:34211096..34213839-chr17:34217874..34221211,4	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF15-1	chr17:34211386-34211539	ENSG00000237805.1
2	lnc-TAF15-1	chr17:34211382-34211783	NONHSAT053130

No data

Variant related genes	Relation type
ENSG00000161570	Chromatin interaction
ENSG00000267578	Chromatin interaction
ENSG00000172660	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10451309	0.86[GIH][hapmap];1.00[TSI][hapmap]
rs1065341	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16963927	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971570	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971585	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971600	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971620	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2735479	0.95[EUR][1000 genomes]
rs2735482	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2735483	0.95[EUR][1000 genomes]
rs28912069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28914812	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28914818	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4251704	0.89[GIH][hapmap];1.00[TSI][hapmap]
rs4251710	0.89[GIH][hapmap];1.00[TSI][hapmap]
rs4251744	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4251776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59536691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61590868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209512	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7224965	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8073456	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs965984	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9674851	1.00[CEU][hapmap]
rs9895464	1.00[CEU][hapmap]
rs9896368	0.87[TSI][hapmap]
rs9898128	1.00[CEU][hapmap]
rs9914929	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:34207400-34219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:34208000-34215800	Weak transcription	Placenta	Placenta
5	chr17:34208400-34214200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:34208400-34215200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:34208400-34215400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:34208600-34215400	Weak transcription	GM12878-XiMat	blood
9	chr17:34209600-34214200	Weak transcription	Aorta	Aorta
10	chr17:34209800-34214200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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