Variant report

Variant	rs16974961
Chromosome Location	chr19:41600054-41600055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10402037	1.00[CHB][hapmap]
rs10403140	1.00[CHB][hapmap]
rs10403268	1.00[CHB][hapmap]
rs10408019	1.00[CHB][hapmap]
rs10409701	1.00[CHB][hapmap]
rs10410347	1.00[CHB][hapmap]
rs10422282	1.00[CHB][hapmap]
rs10422729	1.00[CHB][hapmap]
rs10423743	1.00[CHB][hapmap]
rs10425590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10426454	1.00[CHB][hapmap]
rs11083592	1.00[CHB][hapmap]
rs11667976	1.00[CHB][hapmap]
rs11878463	1.00[CHB][hapmap]
rs17657660	1.00[CHB][hapmap]
rs7256466	1.00[CHB][hapmap]
rs8109507	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv978819	chr19:41589889-41601315	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41598800-41601600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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