Variant report

Variant	rs16975290
Chromosome Location	chr13:110723156-110723157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11841329	1.00[EUR][1000 genomes]
rs521699	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56294719	1.00[EUR][1000 genomes]
rs57652802	1.00[EUR][1000 genomes]
rs58702949	1.00[EUR][1000 genomes]
rs58824458	1.00[EUR][1000 genomes]
rs60015252	1.00[EUR][1000 genomes]
rs60279490	1.00[EUR][1000 genomes]
rs61661904	1.00[EUR][1000 genomes]
rs626680	1.00[EUR][1000 genomes]
rs645511	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs666338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7319834	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7320392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7326006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7327695	1.00[EUR][1000 genomes]
rs7332823	1.00[EUR][1000 genomes]
rs7333839	1.00[EUR][1000 genomes]
rs7333840	1.00[EUR][1000 genomes]
rs7337040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73611449	1.00[EUR][1000 genomes]
rs73624503	1.00[EUR][1000 genomes]
rs73624510	1.00[EUR][1000 genomes]
rs73624516	1.00[EUR][1000 genomes]
rs73624520	1.00[EUR][1000 genomes]
rs73624531	1.00[EUR][1000 genomes]
rs7982044	1.00[EUR][1000 genomes]
rs7982267	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7983033	1.00[EUR][1000 genomes]
rs7983565	1.00[EUR][1000 genomes]
rs7984919	1.00[EUR][1000 genomes]
rs7992629	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7992797	1.00[EUR][1000 genomes]
rs8000352	1.00[EUR][1000 genomes]
rs9301428	1.00[EUR][1000 genomes]
rs9301430	1.00[EUR][1000 genomes]
rs9583454	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583455	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583457	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583462	1.00[EUR][1000 genomes]
rs9588062	1.00[EUR][1000 genomes]
rs9588085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588087	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588099	1.00[EUR][1000 genomes]
rs9588106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110722000-110723600	Enhancers	HSMM	muscle
2	chr13:110722200-110723200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:110722200-110723600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:110722200-110723600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110722200-110724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:110722200-110724000	Enhancers	HMEC	breast
7	chr13:110722200-110724000	Enhancers	NHEK	skin
8	chr13:110722200-110725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:110722200-110726200	Weak transcription	Brain Germinal Matrix	brain
10	chr13:110722400-110723200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:110722400-110723400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110722400-110723600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:110722600-110723200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:110722600-110723600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110722800-110723400	Enhancers	Osteobl	bone
16	chr13:110723000-110723200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:110723000-110723400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:110723000-110723400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:110723000-110723400	Flanking Active TSS	HSMMtube	muscle

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