Variant report

Variant	rs16975751
Chromosome Location	chr19:42936106-42936107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10416062	1.00[YRI][hapmap]
rs10423047	1.00[YRI][hapmap]
rs10425139	1.00[YRI][hapmap]
rs7245385	0.89[YRI][hapmap]
rs7251638	1.00[YRI][hapmap]
rs7254369	0.90[YRI][hapmap]
rs7254839	1.00[YRI][hapmap]
rs7255015	1.00[YRI][hapmap]
rs8100511	0.85[YRI][hapmap]
rs8102976	0.94[YRI][hapmap]
rs8103051	0.85[YRI][hapmap]
rs8103108	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42928600-42936600	Weak transcription	Right Atrium	heart
2	chr19:42928600-42936800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:42928600-42937000	Weak transcription	Brain Substantia Nigra	brain
4	chr19:42928800-42937200	Weak transcription	Lung	lung
5	chr19:42928800-42937400	Weak transcription	Stomach Mucosa	stomach
6	chr19:42928800-42937600	Weak transcription	Brain Germinal Matrix	brain
7	chr19:42928800-42937600	Weak transcription	Gastric	stomach
8	chr19:42928800-42944800	Weak transcription	Esophagus	oesophagus
9	chr19:42929000-42937600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:42929400-42936600	Weak transcription	Right Ventricle	heart
11	chr19:42929400-42937000	Weak transcription	Fetal Intestine Small	intestine
12	chr19:42929400-42937400	Weak transcription	Spleen	Spleen
13	chr19:42929600-42945200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:42931400-42937000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr19:42931600-42936600	Weak transcription	Left Ventricle	heart
16	chr19:42931600-42937000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr19:42931600-42937200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:42931600-42937600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr19:42931800-42936800	Weak transcription	Brain Hippocampus Middle	brain
20	chr19:42931800-42937200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr19:42932600-42937200	Weak transcription	Fetal Heart	heart
22	chr19:42932600-42937600	Weak transcription	Fetal Stomach	stomach
23	chr19:42933000-42936800	Weak transcription	Fetal Intestine Large	intestine
24	chr19:42933000-42937000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr19:42933000-42937600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:42933200-42936200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr19:42933200-42937000	Weak transcription	Brain Anterior Caudate	brain
28	chr19:42933200-42937600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:42934400-42937400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:42935000-42937200	Enhancers	Adipose Nuclei	Adipose
31	chr19:42935600-42936800	Weak transcription	A549	lung

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