Variant report

Variant	rs16982026
Chromosome Location	chr2:20994718-20994719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20993076..20996076-chr2:21021207..21023314,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118961	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12469525	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12476001	0.92[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes]
rs340603	0.96[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340607	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs4971529	0.92[EUR][1000 genomes]
rs514459	0.87[LWK][hapmap];0.89[YRI][hapmap]
rs518968	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs535022	0.81[LWK][hapmap];0.93[YRI][hapmap]
rs575246	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs597781	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645100	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645150	0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs666471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs839915	1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16982026	PIP4K2B	trans	brain	seeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20926400-20995000	Weak transcription	Hela-S3	cervix
2	chr2:20954200-21001200	Weak transcription	NH-A	brain
3	chr2:20958600-20995800	Weak transcription	HMEC	breast
4	chr2:20959000-20995400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:20959200-20997000	Weak transcription	Brain Substantia Nigra	brain
6	chr2:20960800-20996200	Weak transcription	HSMMtube	muscle
7	chr2:20964000-20996000	Weak transcription	Osteobl	bone
8	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
10	chr2:20968600-20996200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:20969000-21003000	Weak transcription	Gastric	stomach
12	chr2:20970800-20996400	Weak transcription	Brain Anterior Caudate	brain
13	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
15	chr2:20974800-21000200	Weak transcription	HSMM	muscle
16	chr2:20975000-20996200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:20980800-20997800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:20983400-20999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:20984200-20997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:20984800-20996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:20986800-20995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:20987000-20995800	Weak transcription	Placenta	Placenta
23	chr2:20987200-20997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:20987400-20997000	Weak transcription	Brain Angular Gyrus	brain
25	chr2:20989200-20997200	Weak transcription	Esophagus	oesophagus
26	chr2:20989200-20999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:20989200-21006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:20989400-20996200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:20989600-20996000	Weak transcription	Fetal Brain Male	brain
30	chr2:20989600-20999200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:20989600-21003200	Weak transcription	Left Ventricle	heart
32	chr2:20989600-21009000	Weak transcription	Fetal Lung	lung
33	chr2:20989600-21010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:20989800-20995800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:20989800-20996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:20989800-21000400	Weak transcription	Fetal Stomach	stomach
37	chr2:20989800-21003200	Weak transcription	Aorta	Aorta
38	chr2:20989800-21003800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:20990000-20999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr2:20990000-21002400	Weak transcription	Fetal Thymus	thymus
41	chr2:20990200-20996200	Weak transcription	Adipose Nuclei	Adipose
42	chr2:20990200-20998400	Weak transcription	Dnd41	blood
43	chr2:20990200-21002800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:20990200-21003000	Weak transcription	Lung	lung
45	chr2:20990200-21006200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr2:20990400-20998200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:20990400-21001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr2:20990600-20995800	Weak transcription	Liver	Liver
49	chr2:20990600-20997200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:20991200-20998400	Weak transcription	Rectal Mucosa Donor 29	rectum

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