Variant report

Variant	rs16983815
Chromosome Location	chr19:52941335-52941336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1651539	0.83[AFR][1000 genomes]
rs28843769	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3786490	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066537	chr19:52794424-53044977	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv544060	chr19:52794424-53044977	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2762048	chr19:52895166-52997571	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1063648	chr19:52938131-53041119	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3415774	chr19:52938189-52970794	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52929000-52941400	Weak transcription	Brain Substantia Nigra	brain
2	chr19:52930000-52941400	Weak transcription	Brain Hippocampus Middle	brain
3	chr19:52938800-52941600	Weak transcription	Brain Angular Gyrus	brain
4	chr19:52939000-52941600	Weak transcription	Ovary	ovary
5	chr19:52940200-52943400	Weak transcription	Brain Germinal Matrix	brain
6	chr19:52940400-52942000	ZNF genes & repeats	Left Ventricle	heart
7	chr19:52940800-52941600	Strong transcription	Brain Inferior Temporal Lobe	brain
8	chr19:52940800-52942600	Strong transcription	Brain Anterior Caudate	brain
9	chr19:52940800-52946200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr19:52941000-52942000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
11	chr19:52941200-52941600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:52941200-52942000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr19:52941200-52942200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr19:52941200-52942200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
15	chr19:52941200-52946200	ZNF genes & repeats	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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