Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11906542	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11907112	0.87[EUR][1000 genomes]
rs11907557	0.87[EUR][1000 genomes]
rs13433130	0.87[EUR][1000 genomes]
rs13433219	0.87[EUR][1000 genomes]
rs13433381	0.83[EUR][1000 genomes]
rs16986554	0.87[EUR][1000 genomes]
rs2050202	0.90[AFR][1000 genomes]
rs2206646	0.89[AFR][1000 genomes]
rs2206647	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2206648	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35184720	0.87[EUR][1000 genomes]
rs6049637	0.90[AFR][1000 genomes]
rs6049640	0.90[AFR][1000 genomes]
rs6049641	0.90[AFR][1000 genomes]
rs60924123	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6114685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6114688	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6114691	0.87[EUR][1000 genomes]
rs6114694	0.87[EUR][1000 genomes]
rs6114695	0.87[EUR][1000 genomes]
rs6132729	0.90[AFR][1000 genomes]
rs66502369	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73109073	0.81[EUR][1000 genomes]
rs7360577	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7362821	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24369400-24372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr20:24370400-24372800	Enhancers	Primary T cells from cord blood	blood
3	chr20:24370600-24376200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24370600-24387400	Weak transcription	Right Atrium	heart
5	chr20:24371600-24372600	Weak transcription	Fetal Thymus	thymus
6	chr20:24371600-24372600	Weak transcription	Dnd41	blood
7	chr20:24371600-24376000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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