Variant report

Variant	rs1698754
Chromosome Location	chr12:86504197-86504198
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10746359	0.88[CEU][hapmap]
rs10779224	0.80[CEU][hapmap]
rs10779225	0.80[CEU][hapmap]
rs10779227	0.83[CEU][hapmap];0.80[ASN][1000 genomes]
rs10779236	0.84[CEU][hapmap]
rs11117148	0.80[CEU][hapmap]
rs11117154	0.83[CEU][hapmap]
rs11513955	0.80[ASN][1000 genomes]
rs11614214	0.80[CEU][hapmap]
rs12298516	0.83[CEU][hapmap]
rs1493407	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1502803	0.88[CEU][hapmap]
rs1847206	0.80[ASN][1000 genomes]
rs6539944	0.80[ASN][1000 genomes]
rs6539947	0.84[ASN][1000 genomes]
rs7302043	0.83[CEU][hapmap]
rs7398950	0.83[CEU][hapmap];0.80[ASN][1000 genomes]
rs7485853	0.80[CEU][hapmap]
rs7486591	0.86[CEU][hapmap]
rs7489114	0.83[CEU][hapmap]
rs7961367	0.83[CEU][hapmap]
rs7965726	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs7967417	0.83[CEU][hapmap]
rs839091	0.84[CEU][hapmap];0.84[ASN][1000 genomes]
rs839135	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs839138	0.95[GIH][hapmap];0.80[TSI][hapmap]
rs839181	1.00[ASN][1000 genomes]
rs9706029	0.83[CEU][hapmap]
rs9738989	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3345033	chr12:86458294-86514745	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470311	chr12:86484366-86550783	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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