Variant report

Variant	rs16989418
Chromosome Location	chrX:31196188-31196189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16989365	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs16989383	1.00[MEX][hapmap]
rs16989410	1.00[MEX][hapmap]
rs7065753	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16989418	FHL1	trans	lymphoblastoid	seeQTL
rs16989418	SATB1	trans	lymphoblastoid	seeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31140200-31227600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:31140600-31206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:31156800-31224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chrX:31161800-31199800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chrX:31163000-31209000	Weak transcription	Ovary	ovary
7	chrX:31165000-31203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chrX:31177800-31202800	Weak transcription	Brain Angular Gyrus	brain
9	chrX:31182000-31227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chrX:31183000-31199800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chrX:31184400-31197200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chrX:31185000-31200600	Weak transcription	Pancreas	Pancrea
13	chrX:31186400-31196400	Weak transcription	HSMMtube	muscle
14	chrX:31186800-31201800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chrX:31186800-31203200	Weak transcription	Fetal Muscle Leg	muscle
16	chrX:31186800-31217600	Weak transcription	Fetal Intestine Small	intestine
17	chrX:31190400-31196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chrX:31190800-31198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chrX:31195000-31200000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chrX:31195400-31201200	Strong transcription	Hela-S3	cervix
21	chrX:31195800-31197000	Strong transcription	HepG2	liver
22	chrX:31195800-31198800	Strong transcription	Liver	Liver
23	chrX:31196000-31196400	Flanking Active TSS	GM12878-XiMat	blood
24	chrX:31196000-31196600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chrX:31196000-31197000	Strong transcription	Left Ventricle	heart
26	chrX:31196000-31197800	Strong transcription	Adipose Nuclei	Adipose

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