Variant report
| Variant | rs169953 |
|---|---|
| Chromosome Location | chr5:151444352-151444353 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs153537 | 0.84[EUR][1000 genomes] |
| rs153538 | 0.84[EUR][1000 genomes] |
| rs154097 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs154099 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs154106 | 0.83[EUR][1000 genomes] |
| rs154107 | 0.84[EUR][1000 genomes] |
| rs154695 | 0.85[EUR][1000 genomes] |
| rs154696 | 0.85[EUR][1000 genomes] |
| rs154700 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs154702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs159494 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs159583 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs159589 | 0.85[EUR][1000 genomes] |
| rs1896778 | 0.84[EUR][1000 genomes] |
| rs253725 | 0.84[EUR][1000 genomes] |
| rs253727 | 0.84[EUR][1000 genomes] |
| rs253728 | 0.82[EUR][1000 genomes] |
| rs253729 | 0.84[EUR][1000 genomes] |
| rs253730 | 0.84[EUR][1000 genomes] |
| rs2584910 | 0.84[EUR][1000 genomes] |
| rs29846 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs29847 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs29850 | 0.85[EUR][1000 genomes] |
| rs29853 | 0.85[EUR][1000 genomes] |
| rs388795 | 0.84[EUR][1000 genomes] |
| rs39580 | 0.85[EUR][1000 genomes] |
| rs42390 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs43166 | 0.85[EUR][1000 genomes] |
| rs518297 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv5071 | chr5:151438330-151472013 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv508384 | chr5:151438582-151487326 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151432600-151450000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
