Variant report

Variant	rs16998128
Chromosome Location	chrX:31173700-31173701
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10521963	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10521964	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs16989373	1.00[CHB][hapmap]
rs16989405	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs16989416	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap]
rs16989417	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs16998130	1.00[CHB][hapmap]
rs16998140	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs17338339	0.86[CHB][hapmap]
rs17338346	1.00[CHB][hapmap]
rs17340547	0.86[CHB][hapmap]
rs17340554	1.00[CHB][hapmap]
rs17340561	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs17340568	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1921384	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap]
rs1921393	1.00[CHB][hapmap]
rs2242311	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.81[YRI][hapmap]
rs3816797	1.00[CHB][hapmap]
rs7883183	1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31134000-31188200	Weak transcription	Aorta	Aorta
2	chrX:31135800-31182800	Weak transcription	Pancreas	Pancrea
3	chrX:31137200-31183000	Weak transcription	Gastric	stomach
4	chrX:31140200-31227600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:31140600-31206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:31151600-31183400	Weak transcription	HepG2	liver
8	chrX:31156400-31187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chrX:31156800-31224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chrX:31157200-31174000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chrX:31157200-31175200	Weak transcription	Fetal Intestine Small	intestine
12	chrX:31157200-31182800	Weak transcription	Fetal Intestine Large	intestine
13	chrX:31161800-31199800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chrX:31162400-31173800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chrX:31162600-31177000	Weak transcription	Lung	lung
16	chrX:31163000-31209000	Weak transcription	Ovary	ovary
17	chrX:31163200-31181400	Weak transcription	HMEC	breast
18	chrX:31163600-31181200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chrX:31163800-31184600	Weak transcription	HSMMtube	muscle
20	chrX:31164600-31188000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chrX:31164600-31196000	Weak transcription	Left Ventricle	heart
22	chrX:31164800-31189600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chrX:31165000-31185200	Weak transcription	Adipose Nuclei	Adipose
24	chrX:31165000-31203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chrX:31165400-31181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chrX:31166000-31196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chrX:31167800-31181600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chrX:31167800-31183600	Weak transcription	Liver	Liver
29	chrX:31172000-31187800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chrX:31173600-31193600	Strong transcription	Hela-S3	cervix

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