Variant report

Variant	rs17003351
Chromosome Location	chr4:79487206-79487207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79486780..79488459-chr4:79489706..79491396,2	K562	blood:
2	chr4:78783792..78785533-chr4:79484545..79487269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169288	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10452151	1.00[MEX][hapmap]
rs61295695	1.00[AMR][1000 genomes]
rs73828072	1.00[AMR][1000 genomes]
rs7673877	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
2	chr4:79474600-79488200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:79478800-79489800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:79481800-79521000	Weak transcription	Right Ventricle	heart
5	chr4:79482400-79494800	Weak transcription	Left Ventricle	heart
6	chr4:79482600-79488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:79482600-79490600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:79482800-79488000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:79482800-79490800	Weak transcription	Fetal Stomach	stomach
10	chr4:79482800-79505000	Weak transcription	Fetal Lung	lung
11	chr4:79483000-79488000	Weak transcription	Pancreas	Pancrea
12	chr4:79483000-79489800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:79483000-79490600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:79483000-79490600	Weak transcription	Aorta	Aorta
15	chr4:79483000-79493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:79483000-79530000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:79483600-79488000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:79484000-79488200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:79484000-79490000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:79484600-79488000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:79485000-79487400	Enhancers	HUVEC	blood vessel
22	chr4:79485000-79489200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:79485200-79490400	Enhancers	HSMMtube	muscle
24	chr4:79485200-79490600	Enhancers	HSMM	muscle
25	chr4:79485200-79490600	Genic enhancers	NHEK	skin
26	chr4:79485400-79487600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr4:79485600-79490000	Enhancers	NH-A	brain
28	chr4:79485600-79490200	Enhancers	Hela-S3	cervix
29	chr4:79485600-79490600	Enhancers	Stomach Mucosa	stomach
30	chr4:79485800-79487400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
31	chr4:79486000-79487400	Genic enhancers	Fetal Intestine Small	intestine
32	chr4:79486000-79488200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:79486000-79488800	Enhancers	HMEC	breast
34	chr4:79486200-79491200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:79486400-79488400	Enhancers	Lung	lung
36	chr4:79486400-79491200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr4:79486400-79491400	Enhancers	Fetal Intestine Large	intestine
38	chr4:79486600-79488200	Enhancers	NHLF	lung
39	chr4:79486600-79488400	Enhancers	Esophagus	oesophagus
40	chr4:79486600-79488600	Enhancers	Osteobl	bone
41	chr4:79486600-79490000	Enhancers	Right Atrium	heart
42	chr4:79486600-79491000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:79486600-79491200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:79486800-79487400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:79486800-79487400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr4:79486800-79487400	Enhancers	Gastric	stomach
47	chr4:79486800-79487600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr4:79486800-79487600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:79486800-79488400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:79486800-79488600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links